the best option will depend on which intake manifold you have.
If you have a GSR intake manifold you need an ECU that can control the butterfly valve in the manifold.
If you have a skunk2, edelbrock, etc. manifold that is only a single runner, a chipped P28 will work fine.
several good options for a butterfly manifold:
-Chipped P72. Expensive, will work great. honda knock is all but useless, but if you want to monitor it you will need a P72 or P30.
-P75 LS converted to run vtec. Somewhat less available due to fewer people doing conversions. Cheaper, will run IABs quite nicely. No knock monitoring, but who cares?
-P28 ECU with IAB control added. Again, somewhat harder to find due to fewer people doing conversions. Runs great when done right.
-P06 ECU with vtec and IAB added. Again, somewhat harder to find due to fewer people doing conversions. Runs great when done right.
-P05 ECU with vtec, IAB, O2 heater added. Again, somewhat harder to find due to fewer people doing conversions. Runs great when done right.
If you have a single runner manifold, any of the above options will work fine. A simple chipped P28 or P05/06 conversion without the IAB circuitry will work fine.
I have a standing offer: send two P05 or P06 ECUs and $7 to cover return shipping, and I'll send you back a vtec ECU. If you want me to do the IAB conversion too, not an issue. I'll ship the ECU back with the CN2 pins installed for easy hookup of your S100/S200 box too. Many satisfied customers + references.