you're talking about running 13's... but you don't want to break anything. i should let you know now. breaking things is inevitable. it will always happen sooner or later. so before you begin funing your project, always put some cushion cash aside just in case.
if you want to do a turbo ls vtec, i'd go with some CP 9.5:1 pistons, and eagle rods. the rods will come with ARP rod bolts, and you might invest in ARP main bolts as well as head studs (great idea for turbo setups)
going 13s is going to be much easier and more practical with boost than on all motor (unless you like nitrous which i don't but everyone has their own cup of tea).
yes, rod bearings are a weak point of LS motors. But throw new bearings in it (ACL / Clevite 77) and you should be just fine.